{
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  "Package": "bsub",
  "Type": "Package",
  "Title": "Submitter and Monitor of the 'LSF Cluster'",
  "Version": "2.0.6",
  "Date": "2025-03-13",
  "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"z.gu@dkfz.de\", role = c(\"aut\", \"cre\"),\ncomment = c('ORCID'=\"0000-0002-7395-8709\"))",
  "biocViews": "Software, Infrastructure",
  "Description": "It submits R code/R scripts/shell commands to 'LSF\ncluster' (<https://en.wikipedia.org/wiki/Platform_LSF>, the\n'bsub' system) without leaving R. There is also an interactive\n'shiny' application for monitoring job status.",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/jokergoo/bsub",
  "License": "MIT + file LICENSE",
  "NeedsCompilation": "no",
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  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.1",
  "Config/pak/sysreqs": "git libglpk-dev libssh-dev libssh2-1-dev\nlibxml2-dev libssl-dev perl",
  "Repository": "https://jokergoo.r-universe.dev",
  "Date/Publication": "2025-03-14 10:17:53 UTC",
  "RemoteUrl": "https://github.com/jokergoo/bsub",
  "RemoteRef": "HEAD",
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  "Maintainer": "Zuguang Gu <z.gu@dkfz.de>",
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  "_selfowned": true,
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  "_updates": [],
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    "bjobs_barplot",
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    "bjobs_exit",
    "bjobs_pending",
    "bjobs_raw",
    "bjobs_reset_timestamp",
    "bjobs_running",
    "bjobs_timeline",
    "bkill",
    "brecent",
    "bsub_chunk",
    "bsub_cmd",
    "bsub_opt",
    "bsub_script",
    "config_bsub",
    "formatFileSize",
    "job_dependency_all",
    "job_dependency_diagram",
    "job_dependency_dot",
    "job_dependency_igraph",
    "job_log",
    "job_rerun",
    "job_status_by_id",
    "job_status_by_name",
    "list_dump_files",
    "list_temp_files",
    "monitor",
    "pipeline_rerun",
    "random_job",
    "remove_temp_files",
    "retrieve_var",
    "run_cmd",
    "ssh_connect",
    "ssh_disconnect"
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      "page": "bconf",
      "title": "Print current configurations",
      "topics": [
        "bconf",
        "print.bconf"
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      "page": "bjobs",
      "title": "Summary of jobs",
      "topics": [
        "bjobs",
        "bjobs_done",
        "bjobs_exit",
        "bjobs_pending",
        "bjobs_raw",
        "bjobs_running",
        "brecent"
      ]
    },
    {
      "page": "visualize",
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      "topics": [
        "bjobs_barplot",
        "bjobs_timeline"
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    },
    {
      "page": "bjobs_reset_timestamp",
      "title": "Clear job history",
      "topics": [
        "bjobs_reset_timestamp"
      ]
    },
    {
      "page": "bkill",
      "title": "Kill jobs",
      "topics": [
        "bkill"
      ]
    },
    {
      "page": "bsub",
      "title": "Submit jobs",
      "topics": [
        "bsub_chunk",
        "bsub_cmd",
        "bsub_script"
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    },
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      "page": "bsub_opt",
      "title": "Parameters for bsub",
      "topics": [
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    {
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      "topics": [
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      "topics": [
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        "job_dependency_igraph"
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      "page": "job_log",
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        "job_log"
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      "page": "rerun",
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        "pipeline_rerun"
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        "job_status_by_name"
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      "topics": [
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        "remove_temp_files"
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      "page": "monitor",
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      "topics": [
        "monitor"
      ]
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      "page": "print.bjobs",
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      "topics": [
        "print.bjobs"
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      "page": "random_job",
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      "page": "ssh",
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