{ "_id": "6a16a332acfb0bcc41d81bcd", "Package": "spiralize", "Type": "Package", "Title": "Visualize Data on Spirals", "Version": "1.1.0", "Date": "2024-06-14", "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"z.gu@dkfz.de\", role = c(\"aut\", \"cre\"),\ncomment = c('ORCID'=\"0000-0002-7395-8709\"))", "Description": "It visualizes data along an Archimedean spiral\n, makes\nso-called spiral graph or spiral chart. It has two major\nadvantages for visualization: 1. It is able to visualize data\nwith very long axis with high resolution. 2. It is efficient\nfor time series data to reveal periodic patterns.", "VignetteBuilder": "knitr", "URL": "https://github.com/jokergoo/spiralize,\nhttps://jokergoo.github.io/spiralize/", "License": "MIT + file LICENSE", "NeedsCompilation": "no", "RoxygenNote": "7.3.1", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libpng-dev perl", "Repository": "https://jokergoo.r-universe.dev", "Date/Publication": "2024-06-15 07:08:20 UTC", "RemoteUrl": "https://github.com/jokergoo/spiralize", "RemoteRef": "HEAD", "RemoteSha": "0c8c3630bce904d12572a9274e950227a4ebb533", "Packaged": { "Date": "2026-05-27 07:50:35 UTC", "User": "root" }, "Author": "Zuguang Gu [aut, cre] (ORCID: )", "Maintainer": "Zuguang Gu ", "MD5sum": "46c1fa7aecf2adfefecd6e6fded353fb", "_user": "jokergoo", "_type": "src", "_file": "spiralize_1.1.0.tar.gz", "_fileid": "024cc5f674cc8db57858940acd82f0a5fee21ab35e840d9eff64d0457659ca7c", "_filesize": 727612, "_sha256": "024cc5f674cc8db57858940acd82f0a5fee21ab35e840d9eff64d0457659ca7c", "_created": "2026-05-27T07:50:35.000Z", "_published": "2026-05-27T07:54:26.477Z", "_distro": "noble", "_jobs": [ { "job": 78031849159, "time": 195, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7234897888" }, { "job": 78031849031, "time": 183, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7234894033" }, { "job": 78031849105, "time": 114, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7234871966" }, { "job": 78031849112, "time": 132, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7234877515" }, { "job": 78031317847, "time": 209, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7234833978" }, { "job": 78031849010, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7234870004" }, { "job": 78031849082, "time": 179, "config": "windows-devel", "r": 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"GlobalOptions", "version": ">= 0.1.1", "role": "Imports" }, { "package": "GetoptLong", "version": ">= 0.1.8", "role": "Imports" }, { "package": "circlize", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "lubridate", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "ComplexHeatmap", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "grImport", "role": "Suggests" }, { "package": "grImport2", "role": "Suggests" }, { "package": "jpeg", "role": "Suggests" }, { "package": "png", "role": "Suggests" }, { "package": "tiff", "role": "Suggests" }, { "package": "cranlogs", "role": "Suggests" }, { "package": "cowplot", "role": "Suggests" }, { "package": "dendextend", "role": "Suggests" }, { "package": "bezier", "role": "Suggests" }, { "package": "magick", "role": "Suggests" }, { "package": "ape", "role": "Suggests" } ], "_owner": "jokergoo", "_selfowned": true, "_usedby": 1, "_updates": [], "_tags": [], "_stars": 158, "_contributors": [ { "user": "jokergoo", "count": 63, "uuid": 449218 } ], "_userbio": { "uuid": 449218, "type": "user", "name": "Zuguang Gu", "description": "A bioinformagician" }, "_downloads": { "count": 716, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/spiralize" }, "_devurl": "https://github.com/jokergoo/spiralize", "_pkgdown": "https://jokergoo.github.io/spiralize/", "_searchresults": 46, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/spiralize.html", "manual.pdf" ], "_homeurl": "https://github.com/jokergoo/spiralize", "_realowner": "jokergoo", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2021-07-01" }, { "version": "1.0.2", "date": "2021-07-08" }, { "version": "1.0.3", "date": "2021-10-12" }, { "version": "1.0.4", "date": "2022-01-15" }, { "version": "1.0.5", "date": "2022-02-05" }, { "version": "1.0.6", "date": "2022-08-09" }, { "version": "1.1.0", "date": "2024-06-18" }, { "version": "1.1.1", "date": "2026-04-04" } ], "_exports": [ "cartesian_to_polar", "cartesian_to_xy", "current_spiral", "current_spiral_vp", "current_track_index", "get_track_data", "horizon_legend", "is_in_track", "n_tracks", "phylo_to_dendrogram", "polar_to_cartesian", "set_current_track", "solve_theta_from_spiral_length", "spiral_arrow", "spiral_axis", "spiral_bars", "spiral_clear", "spiral_dendrogram", "spiral_git_commits", "spiral_highlight", "spiral_highlight_by_sector", "spiral_horizon", "spiral_info", "spiral_initialize", "spiral_initialize_by_gcoor", "spiral_initialize_by_time", "spiral_lines", "spiral_opt", "spiral_phylo", "spiral_pkg_downloads", "spiral_points", "spiral_polygon", "spiral_raster", "spiral_rect", "spiral_segments", "spiral_text", "spiral_track", "spiral_xaxis", "spiral_yaxis", "TRACK_META", "xy_to_cartesian", "xy_to_polar" ], "_help": [ { "page": "current_spiral", "title": "Get the current spiral object", "topics": [ "current_spiral" ] }, { "page": "current_spiral_vp", "title": "Viewport name of the current spiral", "topics": [ "current_spiral_vp" ] }, { "page": "track_helper", "title": "Helper functions for handling tracks", "topics": [ "current_track_index", "is_in_track", "n_tracks", "set_current_track" ] }, { "page": "get_track_data", "title": "Meta-data of a track", "topics": [ "get_track_data" ] }, { "page": "horizon_legend", "title": "Legend for the horizon chart", "topics": [ "horizon_legend" ] }, { "page": "solve_theta_from_spiral_length", "title": "Get theta from given spiral lengths", "topics": [ "solve_theta_from_spiral_length" ] }, { "page": "spiral_arrow", "title": "Draw arrows in the spiral direction", "topics": [ "spiral_arrow" ] }, { "page": "spiral_axis", "title": "Draw axis along the spiral", "topics": [ "spiral_axis", "spiral_xaxis" ] }, { "page": "spiral_bars", "title": "Add bars to a track", "topics": [ "spiral_bars" ] }, { "page": "spiral_clear", "title": "Clear the spiral curve", "topics": [ "spiral_clear" ] }, { "page": "spiral_dendrogram", "title": "Draw dendrogram", "topics": [ "spiral_dendrogram" ] }, { "page": "spiral_git_commits", "title": "Visualize git commits", "topics": [ "spiral_git_commits" ] }, { "page": "spiral_highlight", "title": "Highlight a section of the spiral", "topics": [ "spiral_highlight" ] }, { "page": "spiral_highlight_by_sector", "title": "Highlight a sector", "topics": [ "spiral_highlight_by_sector" ] }, { "page": "spiral_horizon", "title": "Draw horizon chart along the spiral", "topics": [ "spiral_horizon" ] }, { "page": "spiral_info", "title": "Information of the current spiral", "topics": [ "spiral_info" ] }, { "page": "spiral_initialize", "title": "Initialize the spiral", "topics": [ "spiral_initialize" ] }, { "page": "spiral_initialize_by_gcoor", "title": "Initialize the spiral with genomic coordinates", "topics": [ "spiral_initialize_by_gcoor" ] }, { "page": "spiral_initialize_by_time", "title": "Initialize the spiral from time objects", "topics": [ "spiral_initialize_by_time" ] }, { "page": "spiral_lines", "title": "Add lines to a track", "topics": [ "spiral_lines" ] }, { "page": "spiral_opt", "title": "Global options", "topics": [ "spiral_opt" ] }, { "page": "spiral_phylo", "title": "Draw phylogenetic tree", "topics": [ "phylo_to_dendrogram", "spiral_phylo" ] }, { "page": "spiral_pkg_downloads", "title": "Visualize package downloads", "topics": [ "spiral_pkg_downloads" ] }, { "page": "spiral_points", "title": "Add points to a track", "topics": [ "spiral_points" ] }, { "page": "spiral_polygon", "title": "Add polygons to a track", "topics": [ "spiral_polygon" ] }, { "page": "spiral_raster", "title": "Add image to a track", "topics": [ "spiral_raster" ] }, { "page": "spiral_rect", "title": "Add rectangles to a track", "topics": [ "spiral_rect" ] }, { "page": "spiral_segments", "title": "Add segments to a track", "topics": [ "spiral_segments" ] }, { "page": "spiral_text", "title": "Add texts to a track", "topics": [ "spiral_text" ] }, { "page": "spiral_track", "title": "Add a new track or move to an existed track", "topics": [ "spiral_track" ] }, { "page": "spiral_yaxis", "title": "Draw y-axis", "topics": [ "spiral_yaxis" ] }, { "page": "TRACK_META", "title": "Get meta data in the current track", "topics": [ "$.TRACK_META", "names.TRACK_META", "print.TRACK_META", "TRACK_META", "[.TRACK_META", "[[.TRACK_META" ] }, { "page": "coordinate", "title": "Transform between coordinate systems", "topics": [ "cartesian_to_polar", "cartesian_to_xy", "polar_to_cartesian", "xy_to_cartesian", "xy_to_polar" ] } ], "_readme": "https://github.com/jokergoo/spiralize/raw/HEAD/README.md", "_rundeps": [ "BiocGenerics", "circlize", "clue", "cluster", "codetools", "colorspace", "ComplexHeatmap", "cpp11", "crayon", "digest", "doParallel", "foreach", "generics", "GetoptLong", "GlobalOptions", "IRanges", "iterators", "lubridate", "matrixStats", "png", "RColorBrewer", "rjson", "S4Vectors", "shape", "timechange" ], "_vignettes": [ { "source": "spiralize.Rmd", "filename": "spiralize.html", "title": "The spiralize package", "author": "Zuguang Gu (z.gu@dkfz.de)", "engine": "knitr::rmarkdown", "headings": [], "created": "2021-06-20 07:28:57", "modified": "2024-06-14 08:53:12", "commits": 15 } ], "_score": 7.037506177691678, "_indexed": true, "_nocasepkg": "spiralize", "_universes": [ "jokergoo", "cola-recount2" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-27T07:53:02.000Z", "distro": "noble", "commit": "0c8c3630bce904d12572a9274e950227a4ebb533", "fileid": "01fecce2a49163aebd210268243ac8dbb12a328cef0b10bc834739bb31058c43", "status": "success", "check": "WARNING", "buildurl": 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