Package: bsub 2.0.3
Zuguang Gu
bsub: Submitter and Monitor of the 'LSF Cluster'
It submits R code/R scripts/shell commands to 'LSF cluster' (<https://en.wikipedia.org/wiki/Platform_LSF>, the 'bsub' system) without leaving R. There is also an interactive 'shiny' application for monitoring job status.
Authors:
bsub_2.0.3.tar.gz
bsub_2.0.3.zip(r-4.5)bsub_2.0.3.zip(r-4.4)bsub_2.0.3.zip(r-4.3)
bsub_2.0.3.tgz(r-4.4-any)bsub_2.0.3.tgz(r-4.3-any)
bsub_2.0.3.tar.gz(r-4.5-noble)bsub_2.0.3.tar.gz(r-4.4-noble)
bsub_2.0.3.tgz(r-4.4-emscripten)bsub_2.0.3.tgz(r-4.3-emscripten)
bsub.pdf |bsub.html✨
bsub/json (API)
NEWS
| # Install 'bsub' in R: |
| install.packages('bsub', repos = c('https://jokergoo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jokergoo/bsub/issues
Last updated 4 months agofrom:738612d174. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 26 2024 |
| R-4.5-win | NOTE | Oct 26 2024 |
| R-4.5-linux | NOTE | Oct 26 2024 |
| R-4.4-win | NOTE | Oct 26 2024 |
| R-4.4-mac | NOTE | Oct 26 2024 |
| R-4.3-win | OK | Oct 26 2024 |
| R-4.3-mac | OK | Oct 26 2024 |
Exports:bconfbjobsbjobs_barplotbjobs_donebjobs_exitbjobs_pendingbjobs_rawbjobs_reset_timestampbjobs_runningbjobs_timelinebkillbrecentbsub_chunkbsub_cmdbsub_optbsub_scriptconfig_bsubformatFileSizejob_dependency_alljob_dependency_diagramjob_dependency_dotjob_dependency_igraphjob_logjob_rerunjob_status_by_idjob_status_by_namelist_dump_fileslist_temp_filesmonitorpipeline_rerunrandom_jobremove_temp_filesretrieve_varrun_cmdssh_connectssh_disconnect
Dependencies:askpasscliclisymbolscodetoolscpp11crayoncredentialscurldigestGetoptLongGlobalOptionsglueigraphjsonlitelatticelifecyclemagrittrMatrixopensslpkgconfigrjsonrlangsshsysvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Print current configurations | bconf print.bconf |
| Summary of jobs | bjobs bjobs_done bjobs_exit bjobs_pending bjobs_raw bjobs_running brecent |
| Visualize statistics of jobs | bjobs_barplot bjobs_timeline |
| Clear job history | bjobs_reset_timestamp |
| Kill jobs | bkill |
| Submit jobs | bsub_chunk bsub_cmd bsub_script |
| Parameters for bsub | bsub_opt |
| Configure bsub global options | config_bsub |
| Format file size | formatFileSize |
| Job dependencies | job_dependency_all job_dependency_diagram job_dependency_dot job_dependency_igraph |
| Obtain Job log | job_log |
| Rerun jobs | job_rerun pipeline_rerun |
| Job status by job ID or name | job_status_by_id job_status_by_name |
| Check whether there are dump files | list_dump_files |
| Clear temporary dir | list_temp_files remove_temp_files |
| Browser-based interactive job monitor | monitor |
| Summary of jobs | print.bjobs |
| Submit a random job | random_job |
| Retrieve saved variable | retrieve_var |
| Run command on submission node | run_cmd |
| Connect to submisstion via ssh | ssh_connect ssh_disconnect |
