Package: bsub 2.0.3

Zuguang Gu

bsub: Submitter and Monitor of the 'LSF Cluster'

It submits R code/R scripts/shell commands to 'LSF cluster' (<https://en.wikipedia.org/wiki/Platform_LSF>, the 'bsub' system) without leaving R. There is also an interactive 'shiny' application for monitoring job status.

Authors:Zuguang Gu

bsub_2.0.3.tar.gz
bsub_2.0.3.zip(r-4.5)bsub_2.0.3.zip(r-4.4)bsub_2.0.3.zip(r-4.3)
bsub_2.0.3.tgz(r-4.4-any)bsub_2.0.3.tgz(r-4.3-any)
bsub_2.0.3.tar.gz(r-4.5-noble)bsub_2.0.3.tar.gz(r-4.4-noble)
bsub_2.0.3.tgz(r-4.4-emscripten)bsub_2.0.3.tgz(r-4.3-emscripten)
bsub.pdf |bsub.html
bsub/json (API)
NEWS

# Install 'bsub' in R:
install.packages('bsub', repos = c('https://jokergoo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jokergoo/bsub/issues

On CRAN:

softwareinfrastructure

4.99 score 24 stars 27 scripts 235 downloads 36 exports 25 dependencies

Last updated 5 months agofrom:738612d174. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winNOTEOct 26 2024
R-4.5-linuxNOTEOct 26 2024
R-4.4-winNOTEOct 26 2024
R-4.4-macNOTEOct 26 2024
R-4.3-winOKOct 26 2024
R-4.3-macOKOct 26 2024

Exports:bconfbjobsbjobs_barplotbjobs_donebjobs_exitbjobs_pendingbjobs_rawbjobs_reset_timestampbjobs_runningbjobs_timelinebkillbrecentbsub_chunkbsub_cmdbsub_optbsub_scriptconfig_bsubformatFileSizejob_dependency_alljob_dependency_diagramjob_dependency_dotjob_dependency_igraphjob_logjob_rerunjob_status_by_idjob_status_by_namelist_dump_fileslist_temp_filesmonitorpipeline_rerunrandom_jobremove_temp_filesretrieve_varrun_cmdssh_connectssh_disconnect

Dependencies:askpasscliclisymbolscodetoolscpp11crayoncredentialscurldigestGetoptLongGlobalOptionsglueigraphjsonlitelatticelifecyclemagrittrMatrixopensslpkgconfigrjsonrlangsshsysvctrs

Readme and manuals

Help Manual

Help pageTopics
Print current configurationsbconf print.bconf
Summary of jobsbjobs bjobs_done bjobs_exit bjobs_pending bjobs_raw bjobs_running brecent
Visualize statistics of jobsbjobs_barplot bjobs_timeline
Clear job historybjobs_reset_timestamp
Kill jobsbkill
Submit jobsbsub_chunk bsub_cmd bsub_script
Parameters for bsubbsub_opt
Configure bsub global optionsconfig_bsub
Format file sizeformatFileSize
Job dependenciesjob_dependency_all job_dependency_diagram job_dependency_dot job_dependency_igraph
Obtain Job logjob_log
Rerun jobsjob_rerun pipeline_rerun
Job status by job ID or namejob_status_by_id job_status_by_name
Check whether there are dump fileslist_dump_files
Clear temporary dirlist_temp_files remove_temp_files
Browser-based interactive job monitormonitor
Summary of jobsprint.bjobs
Submit a random jobrandom_job
Retrieve saved variableretrieve_var
Run command on submission noderun_cmd
Connect to submisstion via sshssh_connect ssh_disconnect