Package: pkgndep 1.99.1

Zuguang Gu

pkgndep: Analyze Dependency Heaviness of R Packages

A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents. The dependency heaviness analysis is visualized by a customized heatmap. The package is described in <doi:10.1093/bioinformatics/btac449>. We have also performed the dependency heaviness analysis on the CRAN/Bioconductor package ecosystem and the results are implemented as a web-based database which provides comprehensive tools for querying dependencies of individual R packages. The systematic analysis on the CRAN/Bioconductor ecosystem is described in <doi:10.1016/j.jss.2023.111610>. From 'pkgndep' version 2.0.0, the heaviness database includes snapshots of the CRAN/Bioconductor ecosystems for many old R versions.

Authors:Zuguang Gu [aut, cre]

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Bug tracker:https://github.com/jokergoo/pkgndep/issues

On CRAN:

37 exports 45 stars 2.96 score 25 dependencies 30 scripts 484 downloads

Last updated 1 years agofrom:66df5ec737. Checks:OK: 5 NOTE: 2. Indexed: yes.

Exports:ALL_BIOC_RELEASESall_pkg_stat_snapshotcheck_pkgchild_dependencyco_heavinessdependency_databasedependency_heatmapdependency_reportdependency_websitedownstream_dependencyget_all_functions_imported_to_childrengini_indexheavinessheaviness_databaseheaviness_from_upstreamheaviness_on_childrenheaviness_on_downstreamheaviness_reportis_parentis_upstreamload_all_pkg_depload_from_heaviness_dbload_heaviness_timelineload_pkg_dbload_pkg_descriptionload_pkg_downstream_dependency_path_snapshotload_pkg_namespaceload_pkg_stat_snapshotloaded_packagesparent_dependencypkgndeppkgndep_optplot.pkgndepprint.pkgndepreformat_dbrequired_dependency_packagesupstream_dependency

Dependencies:BiocGenericsBiocManagerBiocVersionbrewcirclizeclueclustercodetoolscolorspaceComplexHeatmapcrayondigestdoParallelforeachGetoptLongGlobalOptionshashIRangesiteratorsmatrixStatspngRColorBrewerrjsonS4Vectorsshape